Searching the world wide Web

The coverage and recency of the major World Wide Web search engines was analyzed, yielding some surprising results. The coverage of any one engine is significantly limited: No single engine indexes more than about one-third of the "indexable Web," the coverage of the six engines investigated varies by an order of magnitude, and combining the results of the six engines yields about 3.5 times as many documents on average as compared with the results from only one engine. Analysis of the overlap between pairs of engines gives an estimated lower bound on the size of the indexable Web of 320 million pages.     

Sustainable Management of Nutrients in Forage-Based Pasture Soils: Effect of Animal Congregation Sites (5 pp)

Background, Aim and Scope   Grazing animals have a dominant effect on the movement and utilization of nutrients through the soil and plant system, and thus on the fertility of pasture soils. Grazing can accelerate and alter the timing of nutrient transfers, and increase the amount of nutrients cycled from plant to soil. Long periods, position of shade, and water resources for grazing cattle can influence the spatial distribution of soil biochemical properties including soil organic carbon (C), total extractable inorganic nitrogen (TEIN), and Melich 1 extractable total phosphorus (TP). The objective of this study is to test whether cattle congregation sites typical on most Florida ranches, such as mineral feeders, water troughs, and shade areas are more nutrient-rich and may contribute more nutrients to surface and groundwater supply than in other pasture locations under Florida conditions. Materials and Methods: Baseline soil samples around and beneath three congregations sites in established (>10 yr) grazed beef cattle pastures at the United States Department of Agriculture (USDA), Agricultural Research Service (ARS), Subtropical Agricultural Research Station (STARS), Brooksville, FL, were collected in 2003, 2004, and 2005. Results: The levels of soil TEIN and TP were significantly (p ≤ 0.001) affected by the interaction of congregation sites and distance away from the center of the sites. Mineral feeders had the highest concentration of TP followed by shades and water troughs. The concentrations of soil TP decreased almost linearly with distance (x = meter) away from the center of the mineral feeders (-5.24x + 55.10; R2 = 0.92; p ≤ 0.001) and the shades (-6.25x + 57.21; R2 = 0.85; p ≤ 0.001). However, the level of TP around the water troughs (-0.25x + 16.91; R2 = 0.09) does not appear to change significantly with distance, staying close to about 13-18 mg kg-1. The levels of TEIN decreased linearly with distance away from the mineral feeders from the center of the shades. A linear model can describe the relationship between TEIN and distance away from the center of shades: -11.3x + 78.2; R2 = 0.95; p ≤ 0.001. The shaded sites (34.25 ± 1.7 mg kg-1) had higher levels than the mineral feeders (7.22 ± 0.60 mg kg-1) or water troughs (10.06 ± 0.8 mg kg-1) sites. Discussion: The higher soil TP near and around the mineral feeders can be attributed to the presence of phosphorus in the supplemental feeds. The average level of soil TP in the mineral feeders of 34.05 ± 0.44 mg kg-1 was not high enough to be of environmental concern. Losses of soil phosphorus by overland flow are becoming a big concern when the concentrations for soil phosphorus exceeded 150 mg kg-1 in the upper 20 cm of soils. With TN, the shaded sites (34.25 ± 1.7 mg kg-1) had either higher levels than the mineral feeders (7.22 ± 0.60 mg kg-1) or water trough (10.06 ± 0.80 mg kg-1) sites. Higher TEIN content at the shade sites may have been more likely due to frequent urination of animals and lack of vegetation immediately adjacent to shades. The lack of vegetation within and/or near the shades then had no uptake mechanism for removal of inorganic nitrogen, unlike the heavy demand for inorganic nitrogen by bahiagrass in other areas of the pasture. An accumulation of TEIN immediately adjacent to shades could lead to a potential point source that would be susceptible to leaching or gaseous losses to the environment. Conclusions: Early results of the study are suggesting that cattle congregation sites in beef cattle operations in Florida are not nutrient-rich, therefore may not contribute more nutrients to surface and groundwater supply under Florida conditions. Recommendations and Perspectives: Since there is no apparent vertical build up or horizontal movement of TEIN and TP in the landscape, we can then surmise that cattle congregation sites may be considered not a potential source of nutrients at the watershed level, at least on the sand ridge soils in Florida. Further research is continuing, including sampling at cattle congregation sites at other locations in north and south Florida, which started in July 2004.     

Significant increases in pulping efficiency in C4H-F5H-transformed poplars: improved chemical savings and reduced environmental toxins

The gene encoding ferulate 5-hydroxylase (F5H) was overexpressed in poplar (Populus tremula x Populus alba) using the cinnamate-4-hydroxylase (C4H) promoter to drive expression specifically in cells involved in the lignin biosynthetic pathway and was shown to significantly alter the mole percentage of syringyl subunits in the lignin, as determined by thioacidolysis. Analysis of poplar transformed with a C4H-F5H construct demonstrated significant increases in chemical (kraft) pulping efficiency from greenhouse-grown trees. Compared to wild-type wood, decreases of 23 kappa units and increases of >20 ISO brightness units were observed in trees exhibiting high syringyl monomer concentrations. These changes were associated with no significant modification in total lignin content and no observed phenotypic differences. C4H-F5H-transformed trees could increase pulp throughputs at mills by >60% while concurrently decreasing chemicals employed during processing (chemical pulping and bleaching) and, consequently, the amount of deleterious byproducts released into the environment.     

Sources of nitrogen and yield advantages for monocropping and mixed cropping with cowpeas (Vigna unguiculata L.) and upland rice (Oryza sativa L.)

Summary Sources of N used by cropped and intercropped cowpeas and rice were determined by the ¹⁵N isotope-dilution technique. The biological efficiency of intercropping cowpeas and rice was assessed by calculating the land equivalent ratio of dry matter yield, total N, and uptake of N. A reduced N uptake by both cowpeas and rice during mixed cropping was attributed to mutual competition, with both crops competing effectively for the scarce environmental resources. The lack of a significant difference in the uptake of fertilizer and soil N by mixed-crop rice and cowpeas is an indication that the soil N was sufficient and that the mixed cropping did not create any imbalance in soil and fertilizer N uptake. The land equivalent ratio ranged between 120% and 180% for shoot dry matter and total N, showing that biological efficiency was increased by intercropping cowpeas with rice. The proportion of N derived from the atmosphere by mono- and intercropped cowpeas was not significantly different, showing that the potential of cowpeas to fix N₂ was independent of the cropping system, since the rice did not stimulate the cowpeas to fix more N₂.     

Identification on commercialized products of AFLP markers able to discriminate slow- from fast-growing chicken strains

The European chicken meat market is characterized by numerous quality marks: "Label de Qualité Wallon" in Belgium, "Label Rouge" in France, denominations of geographical origin, organic agriculture, etc. Most of those certified productions have specifications requiring the use of slow-growing chicken strains. The amplified fragment length polymorphism (AFLP) technique has been used to search molecular markers able to discriminate slow-growing chicken strains from fast-growing ones and to authenticate certified products. Two pairs of restriction enzymes (EcoRI/MseI and EcoRI/TaqI) and 121 selective primer combinations were tested on individual DNA samples from chicken products essentially in carcass form that were ascribed as belonging to either slow- or fast-growing strains. Within the resulting fingerprints, two fragments were identified as type-strains specific markers. One primer combination gives a band (333 bp) that is specific for slow-growing chickens, and another primer pair generates a band (372 bp) that was found to be characteristic of fast-growing chickens. The two markers were isolated, cloned, and sequenced. The effectiveness and the specificity of the two interesting determinants were assessed on individuals of two well-known strains (ISA 657 and Cobb 500) and on commercialized products coming from various origins.     

Implementing Atmospheric Fate in Regulatory Risk Assessment of Pesticides: (How) Can It Be Done?

Atmospheric fate of pesticides and their possible effects in ecosystems beyond the immediate surrounding of the application site are not actively considered in currently used regulatory risk assessment schemes. Concern with respect to atmospheric transport and subsequent deposition of pesticides in non-target areas is however growing. In this article the results of discussions on the possibilities of implementing atmospheric fate in regulatory risk assessment are presented. It is concluded that implementing atmospheric fate in regulatory risk assessment schemes is possible and that, from a scientific point of view, these schemes should distinguish between pesticides on the basis of both their possibility/probability to reach non-target areas and on their toxicity. This implies that application of the precautionary principle or use of intrinsic pesticide properties alone is not considered justifiable. It is recommended that the risk assessment scheme should follow a tiered approach. The first tier should be entered only if the existing regulatory risk assessment procedure, including a local PEC:PNEC calculation, has been passed and involves a test for the pesticide's total atmospheric emission potential, i.e. its potential for becoming airborne during and after application. The second tier, which is only entered if the total emission potential is higher than a certain trigger value, should consist of a PEC:PNEC calculation for regional off-site areas (10-50 km) (tier 2A). If the pesticide's atmospheric transport potential is expected to exceed a certain value, the PEC:PNEC ratio should also be calculated for more remote areas (>1000 km) (tier 2B).     

Assessment of Water Quality in Association with Land use in the Tillamook Bay Watershed, Oregon, USA

The water quality in tributaries to Tillamook Bay, Oregon, frequently exceeds standards for fecal coliform bacteria (FCB) and temperature. FCB inputs to the bay have forced periodic closure of the oyster shellfish industry. In addition, impaired water quality may be contributing to reduced salmonid populations in the bay and its tributaries through reduction in the quality of the habitat. Because of these concerns, the Tillamook Bay National Estuary Project (TBNEP) conducted several characterization studies and a long-term water quality monitoring program for the tributary rivers. This paper summarizes data collected to date within these efforts, including storm-based data on FCB and total suspended solids (TSS), and bimonthly data on nutrient concentrations in selected rivers. Monitoring data from 1996 to 2002 are summarized. Results for FCB and TSS are reported by storm, which are classified according to season and precipitation patterns in order to minimize intra-annual variability. There are not indications of large changes in water quality throughout the period of record, but it is too early in the program for trends analysis. Storms that exhibited the highest FCB concentrations tended to be those that occurred during fall and/or those that were preceded by relatively dry conditions and included high rainfall intensity. Implementation of storm-based monitoring and classification of storms according to season effectively reduces the large variability inherent in the FCB monitoring data, thereby facilitating future trends analysis. Continued storm-based monitoring of FCB and TSS, and also continued collection of rainfall and river discharge data, will provide the database that will be needed to determine to what extent on-the-ground remediation actions and best management practices (BMPs) within the Tillamook Basin are having their desired effects.     

Comparative study of methods for DNA preparation from olive oil samples to identify cultivar SSR alleles in commercial oil samples: possible forensic applications

Virgin olive oil is made from diverse cultivars either mixed or single. Those ensure different tastes and typicity, and these may be also enhanced by the region of production of cultivars. The different olive oil labels correspond to their chemical composition and acidity. Labels also may correspond to a protected origin indication, and thus, such oils contain a given composition in cultivars. To verify the main cultivars used at the source of an olive oil sample, our method is based on DNA technology. DNA is present in all olive oil samples and even in refined oil, but the quantity may depend on the oil processing technology and oil conservation conditions. Thus, several supports were used to retain DNA checking different techniques (silica extraction, hydroxyapatite, magnetic beads, and spun column) to prepare DNA from variable amounts of oil. At this stage, it was usable for amplification through PCR technology and especially with the magnetic beads, and further purification processes were checked. Finally, the final method used magnetic beads. DNA is released from beads in a buffer. Once purified, we showed that it did not contain compounds inhibiting PCR amplification using SSR primers. Aliquot dilution fractions of this solution were successfully routinely used through PCR with different SSR primer sets. This enables confident detection of eventual alien alleles in oil samples. First applied to virgin oil samples of known composition, either single cultivars or mixtures of them, the method was verified working on commercial virgin oil samples using bottles bought in supermarkets. Last, we defined a protocol starting from 2 x 40 mL virgin olive oil, and DNA was prepared routinely in about 5 h. It was convenient to genotype together several loci per sample to check whether alleles were in accordance with those of expected cultivars. Thus, forensic applications of our method are expected. However, the method needs further improvement to work on all oil samples.     

Increased tolerance to annual ryegrass toxicity in sheep given a supplement of cobalt

SUMMARY To determine whether oral cobalt supplements could modify the clinical onset of annual ryegrass toxicity, groups (n = 5) of sheep were dosed orally with 0, 4 or 16 mg cobalt/day. After 3 weeks on this treatment, toxic ryegrass seed was added to their feed to provide 0, 0.15 and 0.30 mg corynetoxins/kg body weight, daily. Sheep receiving cobalt ingested 30% more toxin than did unsupplemented sheep before clinical signs developed (P = 0.03). There was no significant difference between groups receiving 4 and 16 mg cobalt. The results showed that cobalt delayed, but did not prevent, the onset of clinical signs of annual ryegrass toxicity.